function to plot additional GWAA results

add.plot {GenABEL}R Documentation

function to plot additional GWAA results

Description

Add plot of results of GWA analysis

Usage

add.plot(x, ..., df = 1,  col=c("lightgreen","lightblue"), sort=TRUE, delta = 1)

Arguments

x object of type scan.gwaa-class, as returned by scan.glm, qtscore, ccfast, emp.ccfast, emp.qtscore, or scan.haplo; or of type scan.gwaa.2D-class, as returned by scan.haplo.2D or scan.glm.2D.
... additional arguments to be passed to plot
df P-value at which df to add (1, 2 or "Pc1df")
col which colors to use to depict consecutive chromosomes
sort whether results should be plotted after sorting by chromosome and position
delta gap width between chromosomes

Value

No value returned.

Author(s)

Yurii Aulchenko

See Also

plot, snp.subset, scan.glm, qtscore, ccfast, emp.qtscore, emp.ccfast, scan.haplo, scan.haplo.2D, scan.glm.2D

Examples

data(srdta)
a <- ccfast("bt",srdta,snps=c(1:100))
plot(a)
a1 <- qtscore(bt,srdta,snps=c(1:100))
add.plot(a1,col="red",type="l")

[Package GenABEL version 1.6-7 Index]