Function to generate descriptive summary tables for genotypic data

descriptives.marker {GenABEL}R Documentation

Function to generate descriptive summary tables for genotypic data

Description

Function to generate descriptive summary tables for genotypic data

Usage

	descriptives.marker(data,snpsubset,idsubset,file,mafc,hwec,snpc,idcc,digits = 3)

Arguments

data an object of snp.data-class or gwaa.data-class
snpsubset Index, character or logical vector with subset of SNPs to run analysis on. If missing, all SNPs from data are used for analysis.
idsubset Index, character or logical vector with subset of IDs to run analysis on. If missing, all people from data are used for analysis.
file A string specifying the name of a file to write the tables to (default is missing).
mafc vector containing desired cut-off levels for minor allele frequency
hwec vector containing desired cut-off levels for exact HWE P-values
snpc vector containing desired cut-off levels for SNP call rate
idcc vector containing desired cut-off levels for individual SNP call rate
digits number of digits to be printed

Value

A list containing descriptive tables and statistics

Author(s)

Yurii Aulchenko

Examples

	data(srdta)
	descriptives.marker(srdta)

[Package GenABEL version 1.6-7 Index]