Export GenABEL data in PLINK format...

export.plink {GenABEL}R Documentation

Export GenABEL data in PLINK format...

Description

Export GenABEL data in PLINK format

Usage

export.plink(data, filebasename, phenotypes="all", ...)

Arguments

data GenABEL data object of 'gwaa.data'-class to be exported
filebasename base file name for exported data, extensions '.ped', '.map' and '.phe' (for phenotype file) are added for specific output files
phenotypes NULL (no phenotypes exported), "all" for all phenotypes or a vector of character with names of phneotypes to be exported
... arguments passed to export.merlin

Details

Export GenABEL data in PLINK format. This function is a simple wrapper to export.merlin function with specific arguments + few lines of code to export phenotypes

Author(s)

Yurii Aulchenko


[Package GenABEL version 1.6-7 Index]