creates an snp.data object

snp.data {GenABEL}R Documentation

creates an snp.data object

Description

Creates object of class snp.data-class

Usage

snp.data(nids, rawdata, idnames = as.character(c(1:nids)), 
	snpnames = as.character(c(1:(length(rawdata)/ceiling(nids/4)))), 
	chromosome = as.factor(rep(1,(length(rawdata)/ceiling(nids/4)))), 
	map = as.double(seq(1,(length(rawdata)/ceiling(nids/4)))), 
	coding=as.raw(rep(1,length(rawdata)/ceiling(nids/4))),
	strand=as.raw(rep(0,length(rawdata)/ceiling(nids/4))),
	male = rep(0, nids))

Arguments

nids number of people
idnames list of IDs
male male indicator for IDs
snpnames list of SNP names
chromosome list of chromosomes SNPs belong to
coding list of nucleotide coding for the SNPs
strand strands of the SNPs
map map position of SNPs
rawdata genotypes presented in raw data format

Value

Object of class snp.data-class

Author(s)

Yurii Aulchenko

See Also

snp.data-class


[Package GenABEL version 1.6-7 Index]